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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2916Hypothetical protein; Identified by Glimmer2; putative. (70 aa)    
Predicted Functional Partners:
SPO0214
Membrane protein, putative.
  
     0.736
SPO2773
Lipoprotein, putative.
  
     0.714
SPO2914
Transcriptional regulator, merR family; Identified by match to protein family HMM PF00376.
       0.702
SPO1349
Lipoprotein, putative.
  
     0.667
SPO3182
Hypothetical protein; Identified by similarity to PIR:T03518.
  
     0.655
SPO2919
Hypothetical protein; Identified by similarity to GB:BAC49273.1.
 
     0.654
SPO2917
Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.
       0.642
SPO3454
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.634
fabJ-1
Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
       0.624
SPO2915
Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
       0.603
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.