SPO2919 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO2919

Hypothetical protein; Identified by similarity to GB:BAC49273.1. (162 aa)

Predicted Functional Partners:

fabJ-1

0.817

SPO2917

0.804

SPO2918

0.773

SPO2916

0.650

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO2916	SPO2917	SPO2916	SPO2917	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	0.580
SPO2916	SPO2918	SPO2916	SPO2918	Hypothetical protein; Identified by Glimmer2; putative.	acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.408
SPO2916	SPO2919	SPO2916	SPO2919	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by similarity to GB:BAC49273.1.	0.650
SPO2916	fabJ-1	SPO2916	SPO2920	Hypothetical protein; Identified by Glimmer2; putative.	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.559
SPO2917	SPO2916	SPO2917	SPO2916	Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	Hypothetical protein; Identified by Glimmer2; putative.	0.580
SPO2917	SPO2918	SPO2917	SPO2918	Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.772
SPO2917	SPO2919	SPO2917	SPO2919	Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	Hypothetical protein; Identified by similarity to GB:BAC49273.1.	0.804
SPO2917	fabJ-1	SPO2917	SPO2920	Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.839
SPO2918	SPO2916	SPO2918	SPO2916	acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	Hypothetical protein; Identified by Glimmer2; putative.	0.408
SPO2918	SPO2917	SPO2918	SPO2917	acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	0.772
SPO2918	SPO2919	SPO2918	SPO2919	acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	Hypothetical protein; Identified by similarity to GB:BAC49273.1.	0.773
SPO2918	fabJ-1	SPO2918	SPO2920	acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.999
SPO2919	SPO2916	SPO2919	SPO2916	Hypothetical protein; Identified by similarity to GB:BAC49273.1.	Hypothetical protein; Identified by Glimmer2; putative.	0.650
SPO2919	SPO2917	SPO2919	SPO2917	Hypothetical protein; Identified by similarity to GB:BAC49273.1.	Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	0.804
SPO2919	SPO2918	SPO2919	SPO2918	Hypothetical protein; Identified by similarity to GB:BAC49273.1.	acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.773
SPO2919	fabJ-1	SPO2919	SPO2920	Hypothetical protein; Identified by similarity to GB:BAC49273.1.	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.817
fabJ-1	SPO2916	SPO2920	SPO2916	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	Hypothetical protein; Identified by Glimmer2; putative.	0.559
fabJ-1	SPO2917	SPO2920	SPO2917	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.	0.839
fabJ-1	SPO2918	SPO2920	SPO2918	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.999
fabJ-1	SPO2919	SPO2920	SPO2919	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	Hypothetical protein; Identified by similarity to GB:BAC49273.1.	0.817

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About