fabJ-1 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

fabJ-1

Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. (733 aa)

Predicted Functional Partners:

SPO2918

0.999

bktB

0.996

phbA

0.996

SPO0773

0.996

SPO1013

0.996

SPO3408

0.996

SPO2380

0.979

acdA-1

0.978

acdA-2

0.978

SPO0879

0.973

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0773	SPO0879	SPO0773	SPO0879	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	0.943
SPO0773	SPO1013	SPO0773	SPO1013	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	0.900
SPO0773	SPO2380	SPO0773	SPO2380	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	0.943
SPO0773	SPO2918	SPO0773	SPO2918	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.918
SPO0773	SPO3408	SPO0773	SPO3408	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA C-acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.919
SPO0773	acdA-1	SPO0773	SPO0575	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	acyl-CoA dehydrogenase.	0.943
SPO0773	acdA-2	SPO0773	SPO0582	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	acyl-CoA dehydrogenase.	0.943
SPO0773	bktB	SPO0773	SPO0142	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	Beta-ketothiolase; Identified by similarity to GB:AAC38322.1; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.915
SPO0773	fabJ-1	SPO0773	SPO2920	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.996
SPO0773	phbA	SPO0773	SPO0326	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acetyltransferase; Identified by similarity to SP:P54810; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.911
SPO0879	SPO0773	SPO0879	SPO0773	Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.943
SPO0879	SPO1013	SPO0879	SPO1013	Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	0.801
SPO0879	SPO2918	SPO0879	SPO2918	Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.801
SPO0879	SPO3408	SPO0879	SPO3408	Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	acetyl-CoA C-acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.801
SPO0879	bktB	SPO0879	SPO0142	Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	Beta-ketothiolase; Identified by similarity to GB:AAC38322.1; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.801
SPO0879	fabJ-1	SPO0879	SPO2920	Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.973
SPO0879	phbA	SPO0879	SPO0326	Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	acetyl-CoA acetyltransferase; Identified by similarity to SP:P54810; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.801
SPO1013	SPO0773	SPO1013	SPO0773	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.900
SPO1013	SPO0879	SPO1013	SPO0879	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	0.801
SPO1013	SPO2380	SPO1013	SPO2380	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	0.801

page 1 of 5

Server load: low (32%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About