STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2942Hypothetical protein; Identified by Glimmer2; putative. (124 aa)    
Predicted Functional Partners:
SPO3321
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.734
SPO2943
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
       0.726
SPO1689
Hypothetical protein; Identified by similarity to PIR:AE2803.
  
     0.574
SPO2289
Hypothetical protein; Identified by similarity to PIR:E82389.
  
     0.561
SPO3716
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.551
SPO2290
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG028; identified in over 20 other Roseobacter strains'.
  
     0.516
SPO0286
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.480
SPO2471
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.464
SPO1177
Hypothetical protein; Identified by similarity to GB:BAB50586.1; match to protein family HMM PF06568.
  
     0.430
SPO2618
Hypothetical protein; Identified by similarity to PIR:C75311.
  
     0.425
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.