Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2944Hypothetical protein; Identified by Glimmer2; putative. (74 aa)    
Predicted Functional Partners:
SPO1089
Hypothetical protein; Identified by similarity to GB:AAN33382.1; match to protein family HMM PF04325.
  
    0.982
SPO3522
Iron-sulfur-binding protein, RdxA/RdxB/FixG family; Identified by similarity to SP:P18396; match to protein family HMM PF00037.
   
    0.971
ccoP-1
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
    0.958
ccoO-1
Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781.
   
    0.849
ccoQ-1
Cytochrome c oxidase, cbb3-type, subunit IV; Identified by similarity to GB:AAB02558.1; match to protein family HMM PF05545.
   
    0.820
SPO2237
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.815
SPO0941
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.812
SPO3123
YeeE/YedE family protein; Identified by similarity to SP:P33015; match to protein family HMM PF04143.
  
    0.687
SPO2945
Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.
       0.648
ompW
Outer membrane protein OmpW; Identified by similarity to SP:P17266; match to protein family HMM PF03922.
  
    0.635
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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