Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2959DNA-binding protein, putative; Identified by match to protein family HMM PF01381. (123 aa)    
Predicted Functional Partners:
SPO2958
Identified by match to protein family HMM PF00459; match to protein family HMM TIGR02067.
       0.676
SPO3566
Hypothetical protein; Identified by similarity to GB:CAC47907.1.
  
     0.675
SPO0136
Hypothetical protein; Identified by similarity to GB:BAC47727.1.
  
     0.622
SPO3167
Hypothetical protein; Identified by similarity to PIR:AC3001.
  
     0.614
SPO3151
HAD-superfamily subfamily IIA hydrolase, TIGR01459; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01459; match to protein family HMM TIGR01460.
 
     0.593
recO
DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination.
  
  
 0.585
SPO0137
Hypothetical protein; Identified by similarity to PIR:D97630; match to protein family HMM TIGR02226.
  
     0.580
SPO1008
Hypothetical protein; Identified by similarity to GB:AAN29832.1.
  
     0.554
SPO3206
Hypothetical protein; Identified by similarity to GB:AAK23529.1; match to protein family HMM PF01936.
  
     0.528
flgB
Flagellar basal-body rod protein; Identified by similarity to SP:P24500; similarity to SP:P75934.
  
     0.516
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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