Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO2962Hypothetical protein; Identified by similarity to GB:AAO55291.1. (83 aa)    
Predicted Functional Partners:
SPO2961
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.711
SPO2963
Membrane protein, putative; Identified by match to protein family HMM PF01027; Belongs to the BI1 family.
       0.567
SPO3239
Integral membrane protein; Identified by similarity to GB:CAE09829.1; match to protein family HMM PF00892.
  
     0.541
SPO0300
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.469
SPO1354
Peptidoglycan binding domain protein; Identified by match to protein family HMM PF01471.
  
     0.461
SPO3085
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.453
SPO3279
NUDIX domain protein; Identified by match to protein family HMM PF00293.
  
     0.427
SPO1765
Hypothetical protein; Identified by similarity to GB:CAE26745.1.
  
     0.411
SPO1633
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG030; identified in over 20 other Roseobacter strains'.
  
     0.410
SPO0938
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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