STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2976Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. (230 aa)    
Predicted Functional Partners:
SPO2975
Membrane protein, putative; Identified by similarity to GB:BAB51018.1.
 
     0.727
SPO2977
Adenylate/guanylate cyclase; Identified by match to protein family HMM PF00211.
       0.548
SPO2978
Adenylate/guanylate cyclase; Identified by match to protein family HMM PF00211.
       0.541
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
  
 0.495
SPO2984
RNA pseudouridylate synthase family protein; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.
     
 0.460
SPO2985
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.445
SPO2986
Tellurite resistance protein; Identified by similarity to GB:AAB93480.1; Belongs to the TelA family.
      
 0.445
SPO3441
Hypothetical protein; Identified by similarity to GB:AAC02256.1.
  
     0.445
SPO0460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.428
SPO2974
Hypothetical protein; Identified by similarity to GB:CAE27781.1.
       0.422
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.