STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO2980Porphyromonas-type peptidyl-arginine deiminase family protein; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family. (338 aa)    
Predicted Functional Partners:
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
    
 0.928
SPO0601
Saccharopine dehydrogenase.
 
  
  0.918
SPO0678
Agmatinase, putative; Identified by similarity to SP:Q9BSE5; Belongs to the arginase family.
    
 0.907
speB-3
Agmatinase; Identified by similarity to SP:P16936; match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
    
 0.907
SPO2979
Hypothetical protein; Identified by Glimmer2; putative.
       0.780
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.494
SPO2981
Hypothetical protein; Identified by similarity to GB:CAC67530.1.
       0.484
SPO2013
Membrane protein, putative.
     
 0.457
SPO0791
M23/M37 peptidase/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551.
  
  
 0.453
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
     
 0.448
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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