STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2987Lipoprotein, putative; Identified by similarity to GB:AAB93481.1. (320 aa)    
Predicted Functional Partners:
SPO2985
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.938
SPO2986
Tellurite resistance protein; Identified by similarity to GB:AAB93480.1; Belongs to the TelA family.
 
     0.901
SPO2988
Hypothetical protein; Identified by similarity to GB:CAD18447.1.
 
     0.831
SPO2990
Hypothetical protein; Identified by similarity to PIR:F83875.
 
     0.734
SPO3336
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.716
SPO2968
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.715
SPO2513
Hypothetical protein; Identified by similarity to GB:CAE27057.1.
  
     0.632
ftsQ
Cell division protein ftsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.624
SPO2984
RNA pseudouridylate synthase family protein; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.
       0.615
SPO1103
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.584
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.