STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO2988Hypothetical protein; Identified by similarity to GB:CAD18447.1. (371 aa)    
Predicted Functional Partners:
SPO2990
Hypothetical protein; Identified by similarity to PIR:F83875.
 
  
 0.966
SPO2986
Tellurite resistance protein; Identified by similarity to GB:AAB93480.1; Belongs to the TelA family.
 
     0.887
SPO2985
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.886
SPO2987
Lipoprotein, putative; Identified by similarity to GB:AAB93481.1.
 
     0.803
SPO2950
Hypothetical protein; Identified by similarity to GB:AAQ65571.1; match to protein family HMM PF04536.
  
  
 0.689
SPO2989
Cytochrome b562; Identified by similarity to SP:P16670; match to protein family HMM PF01292.
       0.590
SPO2984
RNA pseudouridylate synthase family protein; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.
  
    0.505
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.