STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dtdD-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (145 aa)    
Predicted Functional Partners:
SPO2993
Identified by match to protein family HMM PF05161.
       0.773
SPO2991
Identified by match to protein family HMM PF00881.
       0.765
SPO2994
Identified by similarity to PIR:I40217; match to protein family HMM PF02129; match to protein family HMM TIGR00976.
       0.634
SPO2995
Peptide/nickel/opine uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.
       0.546
SPO3904
Heat shock protein; 'initially identified as a pseudogene, expression verified by proteomics'; Belongs to the small heat shock protein (HSP20) family.
       0.530
SPO3203
guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
    0.518
SPO2997
Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.
       0.508
SPO2996
Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
       0.506
SPO2998
Peptide/nickel/opine uptake family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
       0.506
SPO2990
Hypothetical protein; Identified by similarity to PIR:F83875.
 
     0.505
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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