Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3000Hypothetical protein; Identified by similarity to GB:BAB51623.1. (311 aa)    
Predicted Functional Partners:
SPO2995
Peptide/nickel/opine uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.
 
   
 0.673
SPO2997
Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.
 
     0.606
SPO3001
Hypothetical protein; Identified by Glimmer2; putative.
       0.594
SPO2998
Peptide/nickel/opine uptake family ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
     0.561
SPO2999
Hypothetical protein; Identified by Glimmer2; putative.
       0.539
SPO1258
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
  
     0.473
SPO2996
Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.461
SPO0816
Hypothetical protein; Identified by similarity to GB:AAN66362.1.
  
     0.456
SPO3620
Sulfonate ABC transporter, periplasmic sulfonate-binding protein.
 
     0.418
SPO3711
Membrane protein, putative.
  
     0.413
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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