STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3003AMP-binding enzyme; Identified by match to protein family HMM PF00501. (629 aa)    
Predicted Functional Partners:
SPO0890
Lipase, putative; Identified by similarity to GB:AAM73853.1.
    
 0.804
SPO3002
Lipase, putative; Identified by similarity to GB:AAC38151.1.
 
 
 0.803
SPO0778
long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.
  
  
 
0.713
SPO1847
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
 
 
0.712
SPO1014
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
  
  
 
0.711
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
 
 0.695
SPO0833
Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512.
    
 
 0.678
SPO1555
Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512.
    
 
 0.678
SPO3296
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
 
 
0.666
SPO1317
Hypothetical protein; Identified by similarity to PIR:H81075.
  
    0.665
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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