Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3008TPR domain protein; Identified by match to protein family HMM PF00515. (192 aa)    
Predicted Functional Partners:
putR
Proline dehydrogenase transcriptional activator; Identified by similarity to SP:Q52710; match to protein family HMM PF01037; match to protein family HMM TIGR01199.
       0.757
SPO3812
Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.
    
 
 0.745
putA
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
       0.623
SPO3011
Identified by match to protein family HMM PF01694.
       0.478
SPO3862
Lipoprotein, putative; Identified by similarity to GB:CAC45660.1.
  
     0.451
SPO0457
Hypothetical protein; Identified by similarity to GB:BAC47480.1.
  
     0.426
SPO2251
Hypothetical protein; Identified by similarity to PIR:F97477.
    
 
 0.404
SPO2729
Hypothetical protein; Identified by similarity to PIR:F97477.
    
 
 0.404
SPO3718
Identified by match to protein family HMM PF00877.
    
 
 0.404
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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