STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3013NADP-dependent oxidoreductase, L4bD family; Identified by match to protein family HMM PF00107. (346 aa)    
Predicted Functional Partners:
SPO3012
Inositol-1-monophosphatase, putative; Identified by similarity to SP:P22783; match to protein family HMM PF00459; Belongs to the inositol monophosphatase superfamily.
     
 0.534
SPO1962
Identified by match to protein family HMM PF01636.
 
    0.479
SPO2549
Identified by match to protein family HMM PF01636.
 
    0.477
ohr
Organic hydroperoxide resistance protein; Identified by similarity to GB:AAC38562.1; match to protein family HMM PF02566.
    0.456
SPO3014
Hypothetical protein; Identified by Glimmer2; putative.
       0.427
SPO2184
Hypothetical protein; Identified by similarity to SP:P55495.
  
  
 0.402
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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