Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3024Adenylate/guanylate cyclase/hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00211; match to protein family HMM PF00561. (465 aa)    
Predicted Functional Partners:
SPO0621
Ankrin repeat protein.
  
 0.778
SPO0901
Adenylate/guanylate cyclase; Identified by match to protein family HMM PF00111; match to protein family HMM PF00211.
  
     0.627
SPO3455
Adenylate/guanylate cyclase; Identified by match to protein family HMM PF00211; match to protein family HMM PF04248.
  
     0.615
SPO0094
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
   
 
 0.606
SPO0163
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
   
 
 0.606
SPO3038
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
   
 
 0.600
SPO0688
Adenylate/guanylate cyclase.
  
     0.594
SPO0132
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
   
 
 0.591
SPO0751
Adenylate/guanylate cyclase; Identified by match to protein family HMM PF00211.
  
     0.570
SPO3023
Hypothetical protein; Identified by similarity to PIR:C83757.
       0.566
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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