STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3026Identified by match to protein family HMM PF03088. (391 aa)    
Predicted Functional Partners:
SPO3025
Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.581
SPO3027
Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155.
     
 0.572
SPO3028
Hypothetical protein; Identified by Glimmer2; putative.
       0.520
SPO3394
GDSL-like lipase/acylhydrolase, putative; Identified by match to protein family HMM PF00657.
 
   
 0.476
SPO0816
Hypothetical protein; Identified by similarity to GB:AAN66362.1.
  
     0.451
SPO2019
exoV domain protein; Identified by similarity to GB:AAA16052.1.
  
     0.425
SPO1845
Oxidoreductase, molybdopterin-binding protein; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.419
SPO0221
Hypothetical protein; Identified by similarity to GB:CAE38612.1.
  
 
 0.409
SPO3002
Lipase, putative; Identified by similarity to GB:AAC38151.1.
 
  
 0.409
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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