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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3039Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein, putative. (247 aa)    
Predicted Functional Partners:
SPO3041
Polar amino acid uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 0.969
glnQ
Glutamine ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.
 
 0.967
SPO3038
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 
 0.843
SPO3042
Polar amino acid uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.700
SPO3040
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00497.
 
     0.624
gltJ
Glutamate/aspartate ABC transporter, permease protein; Assignment based partly on membership in glutamate/aspartate ABC transporter gene cluster; identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.482
gltK
Glutamate/aspartate ABC transporter, permease protein; Identified by similarity to SP:P41075; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.453
SPO2666
Polar amino acid uptake family ABC transporter, permease protein; Identified by similarity to SP:P41074; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.434
gltL
Glutamate/aspartate ABC transporter, ATP-binding protein; Identified by similarity to SP:P41076; match to protein family HMM PF00005.
 
 
 0.421
SPO2665
Assignment partly based on membership in polar amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.417
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.