STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3049Assignment partly based on membership in dipeptide ABC transporter gene cluster; identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409. (556 aa)    
Predicted Functional Partners:
SPO3048
Dipeptide ABC transporter, permease protein; Assignment partly based on membership in dipeptide ABC transporter gene cluster; identified by match to protein family HMM PF00528.
 
 
 0.953
SPO3047
Dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.
 
 
 0.951
SPO3046
Oligopeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.939
SPO1658
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P42062; match to protein family HMM PF00528.
 
 
 0.834
SPO1656
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.802
SPO1657
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.785
SPO3045
Glutamine amidotransferase, class I; Identified by match to protein family HMM PF00117.
 
     0.632
SPO2552
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.629
SPO2750
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
  
     0.624
SPO1441
Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.
  
     0.546
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.