STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3052Hypothetical protein; Identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676. (141 aa)    
Predicted Functional Partners:
SPO3051
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.836
SPO3053
NUDIX domain protein; Identified by match to protein family HMM PF00293.
       0.649
SPO3050
Hypothetical protein; Identified by Glimmer2; putative.
       0.519
SPO3034
Phosphoenolpyruvate-protein phosphotransferase; Identified by similarity to SP:P37177; match to protein family HMM PF00391; match to protein family HMM PF01590; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; Belongs to the PEP-utilizing enzyme family.
 
     0.494
SPO3054
Hypothetical protein; Identified by similarity to GB:CAD71689.1.
       0.482
SPO2855
Cobalt chelatase, pCobT subunit; Identified by similarity to SP:P29934; match to protein family HMM TIGR01651.
  
     0.462
SPO3282
Identified by match to protein family HMM PF05013.
 
     0.432
SPO2853
Cobalt chelatase, CobS subunit; Identified by match to protein family HMM PF06383; match to protein family HMM TIGR01650.
  
     0.423
SPO0910
Hypothetical protein; Identified by similarity to GB:CAE29805.1.
  
     0.416
SPO3451
Modification methylase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
  
     0.415
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.