STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3084Transglycosylase, Slt family; Identified by match to protein family HMM PF01464. (312 aa)    
Predicted Functional Partners:
SPO3085
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.634
fliI
H+-transporting two-sector ATPase, flagellum-specific; Identified by similarity to SP:P26465; match to protein family HMM PF00006; match to protein family HMM TIGR01026.
 
  
 0.580
SPO3171
OmpA domain protein; Identified by match to protein family HMM PF00691.
 
  
 0.483
SPO0479
ISSpo8, transposase; Identified by similarity to GB:AAF61102.1.
   
    0.453
fliE
Flagellar hook-basal body complex protein FliE, putative; Identified by similarity to SP:P24502.
  
  
 0.449
SPO3090
Type II/IV secretion system protein, TadA subfamily; Identified by similarity to GB:AAN75211.1; match to protein family HMM PF00437.
 
    0.443
flgG
Flagellar basal-body rod protein FlgG; Identified by similarity to SP:P75939; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.
 
 
 0.414
SPO0192
Flagellar hook protein FlgE, putative; Identified by similarity to SP:O07884; match to protein family HMM PF00460; match to protein family HMM PF06429.
  
  
 0.406
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
  
 0.401
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.