STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3087Bacterial type II/III secretion system protein; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family. (475 aa)    
Predicted Functional Partners:
SPO3086
Identified by match to protein family HMM PF06981.
 
 
 0.998
SPO3089
ATPase, putative.
 
 
 0.998
SPO3090
Type II/IV secretion system protein, TadA subfamily; Identified by similarity to GB:AAN75211.1; match to protein family HMM PF00437.
 
 0.996
SPO3091
Type II/IV secretion system protein, TadC subfamily; Identified by match to protein family HMM PF00482.
 
 
 0.995
SPO3092
Type II/IV secretion system protein, TadC subfamily; Identified by match to protein family HMM PF00482.
 
 
 0.994
SPO3088
Identified by match to protein family HMM PF00691.
 
    0.947
SPO3095
Membrane protein, putative.
 
  
 0.935
SPO3094
Lipoprotein, putative.
 
 
 0.902
SPO3093
TPR domain protein; Identified by similarity to GB:CAE29125.1; match to protein family HMM PF00515.
 
 
 0.885
SPO3085
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.841
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.