STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3089ATPase, putative. (412 aa)    
Predicted Functional Partners:
SPO3091
Type II/IV secretion system protein, TadC subfamily; Identified by match to protein family HMM PF00482.
 
  
 0.993
SPO3092
Type II/IV secretion system protein, TadC subfamily; Identified by match to protein family HMM PF00482.
 
  
 0.986
SPO3086
Identified by match to protein family HMM PF06981.
 
  
 0.984
SPO3090
Type II/IV secretion system protein, TadA subfamily; Identified by similarity to GB:AAN75211.1; match to protein family HMM PF00437.
 
  
 0.978
SPO3087
Bacterial type II/III secretion system protein; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family.
 
  
 0.969
SPO3095
Membrane protein, putative.
 
  
 0.962
SPO3093
TPR domain protein; Identified by similarity to GB:CAE29125.1; match to protein family HMM PF00515.
 
  
 0.951
SPO3085
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.949
SPO3094
Lipoprotein, putative.
 
  
 0.946
SPO3096
Hypothetical protein; Identified by similarity to GB:BAC95426.1.
 
    0.929
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.