STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmsB-23-hydroxyisobutyrate dehydrogenase; Identified by similarity to GB:AAA50312.1. (269 aa)    
Predicted Functional Partners:
SPO3096
Hypothetical protein; Identified by similarity to GB:BAC95426.1.
       0.785
SPO2416
3-hydroxyisobutyrate dehydrogenase family protein; Identified by similarity to SP:P23523.
  
     0.773
SPO2428
6-phosphogluconate dehydrogenase domain protein; Identified by match to protein family HMM PF03446.
  
     0.771
SPO2859
3-hydroxyisobutyrate dehydrogenase family protein; Identified by similarity to SP:P23523.
  
     0.770
SPO3094
Lipoprotein, putative.
       0.650
SPO3095
Membrane protein, putative.
       0.650
SPO3092
Type II/IV secretion system protein, TadC subfamily; Identified by match to protein family HMM PF00482.
       0.569
SPO3093
TPR domain protein; Identified by similarity to GB:CAE29125.1; match to protein family HMM PF00515.
       0.569
SPO3098
ATP-dependent helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.
       0.563
SPO3091
Type II/IV secretion system protein, TadC subfamily; Identified by match to protein family HMM PF00482.
       0.558
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.