Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
SPO3119Hypothetical protein; Identified by Glimmer2; putative. (118 aa)    
Predicted Functional Partners:
SPO3452a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG015; similar gene identified in less than 5 other Roseobacter strains'.
  
     0.704
SPO0056
Hypothetical protein.
  
     0.693
trgA
Tellurite resistance protein; Identified by similarity to GB:AAB95446.1.
  
     0.682
prmA
Ribosomal protein L11 methyltransferase, putative; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.677
SPO3122
Membrane protein, putative; Identified by similarity to GB:BAC62827.1.
 
     0.638
SPO2693
Hypothetical protein; Identified by similarity to GB:AAN33954.1.
  
     0.637
SPO1198
Hypothetical protein; Identified by similarity to GB:BAC67841.1.
  
     0.625
SPO0214
Membrane protein, putative.
  
     0.579
SPO2652
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.554
SPO3121
Identified by match to protein family HMM PF01554.
       0.545
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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