Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3122Membrane protein, putative; Identified by similarity to GB:BAC62827.1. (410 aa)    
Predicted Functional Partners:
SPO3121
Identified by match to protein family HMM PF01554.
 
   
 0.840
prmA
Ribosomal protein L11 methyltransferase, putative; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.836
SPO0106
Hypothetical protein; Identified by similarity to SP:Q9A321; match to protein family HMM PF03883; Belongs to the UPF0246 family.
  
    0.764
SPO3119
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.638
SPO3123
YeeE/YedE family protein; Identified by similarity to SP:P33015; match to protein family HMM PF04143.
 
     0.577
SPO0055
OmpA domain protein; Identified by match to protein family HMM PF00691.
 
     0.402
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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