STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3126Sigma factor regulator PrtR, putative; Identified by similarity to GB:AAF81073.1. (248 aa)    
Predicted Functional Partners:
SPO3125
RNA polymerase sigma-70 factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR01199; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.976
SPO3124
Hypothetical protein; Identified by similarity to GB:CAC46680.1; match to protein family HMM PF03640.
 
     0.945
SPO1478
RNA polymerase sigma-70 factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.741
SPO2756
RNA polymerase sigma-70 factor, ECF family; Identified by similarity to SP:Q45585; match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.741
SPO3123
YeeE/YedE family protein; Identified by similarity to SP:P33015; match to protein family HMM PF04143.
       0.540
SPO3794
Hypothetical protein; Identified by similarity to GB:AAM35022.1.
  
     0.406
SPO1225
Hypothetical protein; Identified by similarity to GB:AAQ58890.1.
  
     0.404
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.