STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3140Putative protein TIGR01620; Identified by similarity to GB:BAB48295.1; match to protein family HMM TIGR01620. (336 aa)    
Predicted Functional Partners:
SPO3142
Hypothetical protein; Identified by similarity to GB:CAC46385.1.
 
  
 0.993
SPO3141
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.817
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.636
SPO3851
HemY domain protein; Identified by match to protein family HMM PF07219.
  
     0.607
SPO1933
Identified by match to protein family HMM PF06776.
  
     0.586
SPO1180
Hypothetical protein; Identified by similarity to GB:BAB48908.1.
  
     0.576
SPO1671
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.557
mepA
Murein endopeptidase; Identified by similarity to SP:P14007.
  
     0.538
SPO3631
OmpA domain protein; Identified by match to protein family HMM PF00691.
  
     0.503
SPO2567
Hypothetical protein; Identified by similarity to GB:CAE26557.1.
  
     0.462
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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