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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3141Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (146 aa)    
Predicted Functional Partners:
SPO3142
Hypothetical protein; Identified by similarity to GB:CAC46385.1.
  
    0.824
SPO3140
Putative protein TIGR01620; Identified by similarity to GB:BAB48295.1; match to protein family HMM TIGR01620.
       0.821
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.516
SPO2581
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
  
 0.460
SPO3502
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.451
SPO3503
Hypothetical protein; Identified by similarity to GB:AAC44076.1.
  
     0.446
SPO2845
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.438
SPO2776
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.431
SPO3589
Hypothetical protein; Identified by similarity to PIR:AH2740; match to protein family HMM PF06499.
  
     0.404
SPO3809
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
 
   
 0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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