Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3145GumN family protein; Identified by similarity to PIR:AD2899; match to protein family HMM PF07446. (338 aa)    
Predicted Functional Partners:
SPO3146
Identified by match to protein family HMM PF07446.
 
    
0.810
SPO3144
Hypothetical protein; Identified by similarity to GB:BAB48071.1.
       0.557
ppaC
Inorganic pyrophosphatase, manganese-dependent; Identified by similarity to SP:P37487; match to protein family HMM PF02833.
       0.537
SPO3441
Hypothetical protein; Identified by similarity to GB:AAC02256.1.
  
     0.518
SPO2035
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.468
SPO0744
Hypothetical protein; Identified by similarity to GB:CAE30152.1.
  
     0.451
SPO1068
Hypothetical protein; Identified by similarity to GB:CAE10435.1.
  
     0.432
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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