STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3151HAD-superfamily subfamily IIA hydrolase, TIGR01459; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01459; match to protein family HMM TIGR01460. (291 aa)    
Predicted Functional Partners:
SPO3863
HD domain protein; Identified by match to protein family HMM PF01966.
 
  
 0.735
SPO3152
MaoC domain protein; Identified by match to protein family HMM PF01575.
  
    0.721
pyrC
Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
    
   0.637
SPO2959
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
 
     0.593
SPO3150
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
       0.553
SPO2498
2''-deoxycytidine 5''-triphosphate deaminase-like protein.
 
    0.529
hisS
histidyl-tRNA synthetase.
 
    0.521
SPO2285
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
 
     0.520
ribF
Riboflavin biosynthesis protein RibF; Identified by similarity to SP:P73651; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
       0.503
SPO3167
Hypothetical protein; Identified by similarity to PIR:AC3001.
 
     0.486
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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