Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO3167Hypothetical protein; Identified by similarity to PIR:AC3001. (250 aa)    
Predicted Functional Partners:
SPO3851
HemY domain protein; Identified by match to protein family HMM PF07219.
  
     0.745
gloB
Hydroxyacylglutathione hydrolase, putative; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
     
 0.712
ftsQ
Cell division protein ftsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.659
SPO3863
HD domain protein; Identified by match to protein family HMM PF01966.
  
     0.626
SPO2959
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.614
SPO2285
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.592
recO
DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination.
 
   
 0.567
SPO1267
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
 
     0.546
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
     0.524
SPO0136
Hypothetical protein; Identified by similarity to GB:BAC47727.1.
  
     0.519
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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