Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3174Hypothetical protein; Identified by similarity to GB:AAK24192.1. (351 aa)    
Predicted Functional Partners:
SPO3173
Cation transport protein ChaC, putative; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
       0.702
SPO3171
OmpA domain protein; Identified by match to protein family HMM PF00691.
 
     0.610
SPO3172
Hypothetical protein; Identified by similarity to GB:BAC46776.1.
       0.599
SPO2746
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.558
SPO0081
Hypothetical protein; Identified by similarity to GB:AAM48708.1.
  
     0.554
SPO3483
Hypothetical protein; Identified by similarity to PIR:E85765; Belongs to the peptidase S1B family.
  
     0.552
SPO1427
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.514
SPO2289
Hypothetical protein; Identified by similarity to PIR:E82389.
  
     0.501
SPO2503
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.455
SPO0357
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
  
     0.430
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.