STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuDGlycine betaine transporter; Identified by similarity to SP:P54417; match to protein family HMM PF02028; Belongs to the BCCT transporter (TC 2.A.15) family. (611 aa)    
Predicted Functional Partners:
SPO3189
Hypothetical protein; Identified by similarity to GB:AAN68299.1.
 
     0.595
SPO3188
Hypothetical protein; Identified by similarity to GB:AAN68298.1.
 
     0.571
SPO3191
Identified by match to protein family HMM PF00171.
  
  
 0.542
comC
(2R)-3-sulfolactate dehydrogenase; Identified by match to protein family HMM PF02615; PMID: 19581363; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.531
SPO3190
Identified by match to protein family HMM PF01244.
       0.525
SPO1025
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
  
 0.435
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.