STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3209Transporter, LysE family; Identified by match to protein family HMM PF01810. (204 aa)    
Predicted Functional Partners:
SPO2388
Translocator protein, LysE family; Identified by similarity to SP:P27847; match to protein family HMM PF01810.
 
    0.787
SPO2623
Transporter, LysE family; Identified by match to protein family HMM PF01810.
 
    0.787
SPO3213
Membrane protein, putative; Identified by similarity to PIR:F97377; match to protein family HMM PF03458.
  
  
 0.784
SPO3210
Membrane protein, putative; Identified by similarity to GB:AAK24940.1.
       0.778
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.775
SPO3211
Hypothetical protein; Identified by similarity to GB:AAK23900.1.
       0.773
SPO3402
Transporter, LysE family; Identified by similarity to SP:P27847; match to protein family HMM PF01810.
 
    0.679
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
    0.622
SPO3208
Identified by match to protein family HMM PF00043.
  
    0.580
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.