Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3220Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155. (390 aa)    
Predicted Functional Partners:
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
 
 
 0.938
SPO3344
Cys/Met metabolism PLP-dependent enzyme family protein; Identified by match to protein family HMM PF01053.
 
 
 0.930
SPO1431
O-acetylhomoserine aminocarboxypropyltransferase; Identified by similarity to GB:BAB68505.1; match to protein family HMM PF01053; match to protein family HMM TIGR01326.
   
 0.927
aspC-1
Aspartate aminotransferase; Identified by similarity to SP:Q06191.
 
  
0.918
SPO1921
Pyridoxal-phosphate dependent enzyme; Identified by match to protein family HMM PF00291.
    
 0.918
cysK
Cysteine synthase A; Identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139.
    
 0.918
aspC-2
Aspartate aminotransferase; Identified by similarity to SP:Q02635; match to protein family HMM PF00155.
 
  
0.916
SPO1863
Pterin-binding enzyme domain protein; Identified by match to protein family HMM PF00809.
     
 0.911
SPO1884
Identified by match to protein family HMM PF02574.
     
 0.911
SPO3719
Thiosulfate sulfurtransferase, putative; Identified by similarity to PIR:T52663; match to protein family HMM PF00581.
    
 0.904
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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