STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3229Lipoprotein, putative. (138 aa)    
Predicted Functional Partners:
SPO3230
Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155.
       0.723
SPO2647
Hypothetical protein; Identified by similarity to PIR:F95909.
  
     0.700
SPO2648
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.689
SPO2649
Hypothetical protein; Identified by similarity to GB:CAB52234.1.
  
     0.656
SPO1016
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.521
SPO2598
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.519
smc
SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.500
pdhR
Pyruvate dehydrogenase complex repressor; Identified by similarity to SP:P06957; match to protein family HMM PF00392.
       0.495
SPO3232
Membrane protein, putative.
       0.491
SPO1739
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.466
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.