STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdhRPyruvate dehydrogenase complex repressor; Identified by similarity to SP:P06957; match to protein family HMM PF00392. (256 aa)    
Predicted Functional Partners:
SPO3232
Membrane protein, putative.
       0.773
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
  
 0.619
idnO
Gluconate 5-dehydrogenase; Identified by similarity to SP:P39345; match to protein family HMM PF00106.
  
  
 0.616
SPO2543
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
  
 0.614
SPO3470
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
  
 0.545
SPO3230
Aminotransferase, classes I and II; Identified by match to protein family HMM PF00155.
     
 0.539
xylB
Xylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
     
 0.520
SPO3229
Lipoprotein, putative.
       0.495
SPO3340
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
  
 0.461
SPO1553
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
     0.456
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.