Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3260Methyltransferase-like protein; Identified by similarity to GB:AAD44211.1. (260 aa)    
Predicted Functional Partners:
SPO0482
NADH-ubiquinone oxidoreductase family protein.
  
  
 0.716
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
  
  
 0.688
SPO2341
Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444.
 
   0.575
SPO3511
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.565
SPO2977
Adenylate/guanylate cyclase; Identified by match to protein family HMM PF00211.
  
     0.555
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
   
 
 0.552
SPO2208
Hypothetical protein; Identified by similarity to GB:BAB53466.1.
 
   
 0.498
SPO1772
TRAP dicarboxylate transporter, DctQ subunit.
  
     0.487
SPO2879
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.468
SPO3258
Glycosyl hydrolase, family 25; Identified by match to protein family HMM PF01183.
  
    0.457
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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