STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3263Hypothetical protein; Identified by Glimmer2; putative. (150 aa)    
Predicted Functional Partners:
SPO2454
Permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
 
 
 0.924
SPO0079
ABC transporter, ATP-binding protein; Identified by similarity to GB:AAM48706.1; match to protein family HMM PF00005.
   
 
 0.796
SPO3262
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
       0.773
SPO3441
Hypothetical protein; Identified by similarity to GB:AAC02256.1.
  
     0.690
SPO1032
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.611
lptD
Organic solvent tolerance protein, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.608
SPO2028
HD domain protein; Identified by match to protein family HMM PF01966.
  
     0.549
SPO3261
Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.
       0.545
SPO3811
Hypothetical protein; Identified by similarity to GB:AAK25396.1.
 
     0.537
SPO2595
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG035; identified in over 20 other Roseobacter strains'.
  
     0.526
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.