Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3279NUDIX domain protein; Identified by match to protein family HMM PF00293. (149 aa)    
Predicted Functional Partners:
dinB
DNA polymerase IV, putative; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
  
  
 0.678
SPO0725
Bacterial SH3 domain family protein.
 
     0.628
SPO3281
DinB family protein; Identified by similarity to SP:Q02886; match to protein family HMM PF05163.
       0.458
SPO0905
Hypothetical protein; Identified by similarity to PIR:T03518.
  
     0.457
SPO0055
OmpA domain protein; Identified by match to protein family HMM PF00691.
 
   
 0.446
SPO3858
Hypothetical protein; Identified by similarity to GB:BAB50937.1.
  
     0.446
SPO1250
Lipoprotein, putative; Identified by similarity to GB:AAQ60217.1; match to protein family HMM PF03886.
 
     0.433
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.429
SPO2962
Hypothetical protein; Identified by similarity to GB:AAO55291.1.
  
     0.427
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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