STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3282Identified by match to protein family HMM PF05013. (286 aa)    
Predicted Functional Partners:
hutI
Imidazolonepropionase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR01224; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
  
  
 0.757
hutF
Formiminoglutamate deiminase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR02022.
 
 
 0.655
rpmJ
Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.
       0.652
SPO0136
Hypothetical protein; Identified by similarity to GB:BAC47727.1.
  
     0.583
SPO0819
Amidohydrolase domain protein; Identified by match to protein family HMM PF01979.
  
  
 0.511
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.501
SPO2147
Hypothetical protein; Identified by similarity to GB:CAC47284.1; match to protein family HMM PF05962.
 
    0.471
hutH
Histidine ammonia-lyase; Identified by similarity to SP:P21310; match to protein family HMM PF00221; match to protein family HMM TIGR01225; Belongs to the PAL/histidase family.
  
  
 0.462
SPO3052
Hypothetical protein; Identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676.
 
     0.426
SPO1827
N-formylglutamate amidohydrolase; Identified by match to protein family HMM PF05013.
  
   
 0.419
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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