Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
atsAArylsulfatase; Identified by similarity to SP:P51691; match to protein family HMM PF00884. (535 aa)    
Predicted Functional Partners:
SPO3287
Ferric iron ABC transporter, periplasmic ferric iron-binding protein; Identified by match to protein family HMM PF01547.
       0.584
SPO2544
Identified by match to protein family HMM PF04909.
  
     0.511
SPO3036
Identified by match to protein family HMM PF00753.
   
 0.487
SPO1641
Beta-lactamase; Identified by match to protein family HMM PF00144.
 
     0.470
SPO3285
Hypothetical protein; Identified by Glimmer2; putative.
       0.452
SPO1960
Beta-lactamase; Identified by match to protein family HMM PF00144.
 
     0.439
SPO0621
Ankrin repeat protein.
  
 0.403
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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