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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3287Ferric iron ABC transporter, periplasmic ferric iron-binding protein; Identified by match to protein family HMM PF01547. (349 aa)    
Predicted Functional Partners:
SPO3288
Ferric iron ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.994
SPO2689
Iron ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:P21410; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.949
SPO0189
Hypothetical protein; Identified by similarity to GB:AAM42620.1.
  
  
 0.915
SPO0086
Lipoprotein, putative; Identified by similarity to GB:CAC41759.1.
 
    0.845
SPO0465
Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.
   
    0.727
atsA
Arylsulfatase; Identified by similarity to SP:P51691; match to protein family HMM PF00884.
       0.585
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292.
  
  
 0.566
tolQ
Proton transporter TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
  
 0.459
SPO2469
Identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444.
       0.435
SPO0088
Hypothetical protein; Identified by similarity to GB:BAB51963.1.
 
    0.433
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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