Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3287Ferric iron ABC transporter, periplasmic ferric iron-binding protein; Identified by match to protein family HMM PF01547. (349 aa)    
Predicted Functional Partners:
SPO3288
Ferric iron ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.992
SPO2689
Iron ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:P21410; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.941
SPO0189
Hypothetical protein; Identified by similarity to GB:AAM42620.1.
  
  
 0.915
SPO0086
Lipoprotein, putative; Identified by similarity to GB:CAC41759.1.
 
    0.850
atsA
Arylsulfatase; Identified by similarity to SP:P51691; match to protein family HMM PF00884.
       0.584
SPO0088
Hypothetical protein; Identified by similarity to GB:BAB51963.1.
 
    0.451
SPO3111
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
  
  
 0.442
SPO3110
tonB domain protein, putative.
  
  
 0.402
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.401
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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