STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3288Ferric iron ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (565 aa)    
Predicted Functional Partners:
SPO3287
Ferric iron ABC transporter, periplasmic ferric iron-binding protein; Identified by match to protein family HMM PF01547.
 
 
 0.994
SPO0189
Hypothetical protein; Identified by similarity to GB:AAM42620.1.
 
 
 0.975
SPO2689
Iron ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:P21410; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 0.953
SPO3289
phenylacetate-CoA ligase, putative; Identified by similarity to GB:AAF26285.1.
       0.482
SPO3290
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.
  
    0.480
potG
Putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 0.453
SPO2702
Opine/polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
 0.449
SPO1034
Hypothetical protein; Identified by Glimmer2; putative.
       0.405
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.