STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3293Hypothetical protein; Identified by similarity to GB:AAM36995.1. (85 aa)    
Predicted Functional Partners:
SPO3292
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.773
SPO2925
Sporulation related protein; 'Novel gene detected by proteogenomics, SPO_PG029; identified in over 20 other Roseobacter strains'.
  
     0.649
SPO3291
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.
       0.631
SPO0285
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.605
SPO0942
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.565
SPO3294
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.559
SPO2944
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.540
SPO2334
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.504
SPO1012
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
  
     0.495
SPO3864
Hypothetical protein; Identified by similarity to PIR:H84070.
  
     0.485
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.