Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3294Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (328 aa)    
Predicted Functional Partners:
SPO3292
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.994
SPO3295
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.
 
  
 0.947
SPO3291
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.
 
  
 0.913
SPO3296
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
 
    0.905
SPO1850
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 0.897
SPO3290
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.
 
  
 0.872
SPO1492
Branched-chain amino acid ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.865
SPO1849
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.
 
  
 0.845
SPO3289
phenylacetate-CoA ligase, putative; Identified by similarity to GB:AAF26285.1.
 
    0.811
SPO2530
Branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 0.788
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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