STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3296AMP-binding enzyme; Identified by match to protein family HMM PF00501. (657 aa)    
Predicted Functional Partners:
SPO3295
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.
    0.937
SPO3294
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
    0.906
SPO3291
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.
 
    0.890
SPO3292
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
    0.870
SPO3289
phenylacetate-CoA ligase, putative; Identified by similarity to GB:AAF26285.1.
 
    0.838
SPO0890
Lipase, putative; Identified by similarity to GB:AAM73853.1.
   
 
 0.832
SPO3290
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.
    0.820
SPO3297
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
  
 0.685
SPO1847
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
  
  
 
0.683
SPO1014
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
 
0.678
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.