STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3305Identified by match to protein family HMM PF00300. (216 aa)    
Predicted Functional Partners:
lkr
Lysine-ketoglutarate reductase; Identified by similarity to SP:P43065; match to protein family HMM PF01262; match to protein family HMM PF05222.
 
     0.830
SPO3306
Glutathione S-transferase, putative; Identified by similarity to GB:AAC44159.1; match to protein family HMM PF00043; match to protein family HMM PF02798.
       0.763
SPO3309
Saccharopine dehydrogenase, putative; Identified by similarity to SP:Q9P4R4; match to protein family HMM PF03435.
       0.746
SPO3308
Hypothetical protein; Identified by similarity to GB:BAC51725.1.
       0.726
SPO2776
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.534
SPO3304
Amidase, hydantoinase/carbamoylase family; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.
       0.516
SPO2581
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.514
SPO2775
Hypothetical protein; Identified by similarity to SP:P29909.
  
     0.512
SPO2471
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
    0.456
SPO0725
Bacterial SH3 domain family protein.
  
     0.431
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.